Data Browser v3

Examples - Region: 21:33032075-33040899, Gene: TBK1, Variant: 14-20215709-A-T

Query: SQSTM1 Variant Count: 51

Variant Effect Allele Count Sample Count Hom Count Heteroz Count Hom Ref Count AF
5-179248034-C-T NON_SYNONYMOUS_CODING 2 1347 0 2 1345 7.424E-4
5-179250019-C-T INTRON_EXON_BOUNDARY 1 3314 0 1 3313 1.509E-4
5-179250884-C-T NON_SYNONYMOUS_CODING 2 3317 0 2 3315 3.015E-4
5-179250888-C-T NON_SYNONYMOUS_CODING 1 3317 0 1 3316 1.507E-4
5-179250906-C-T NON_SYNONYMOUS_CODING 10 3317 0 10 3307 0.0015
5-179250928-C-T UTR_3_PRIME 1 3316 0 1 3315 1.508E-4
5-179250987-T-A NON_SYNONYMOUS_CODING 1 3312 0 1 3311 1.51E-4
5-179251012-C-T UTR_3_PRIME 1 3314 0 1 3313 1.509E-4
5-179251013-G-A NON_SYNONYMOUS_CODING 3 3311 0 3 3308 4.53E-4
5-179251029-G-A NON_SYNONYMOUS_CODING 1 3315 0 1 3314 1.508E-4
5-179251037-C-T NON_SYNONYMOUS_CODING 1 3316 0 1 3315 1.508E-4
5-179251069-C-G UTR_3_PRIME 1 3317 0 1 3316 1.507E-4
5-179251259-A-G SYNONYMOUS_CODING 1 3289 0 1 3288 1.52E-4
5-179251281-C-T NON_SYNONYMOUS_CODING 1 3288 0 1 3287 1.521E-4
5-179251313-G-A SYNONYMOUS_CODING 3 3292 0 3 3289 4.557E-4
5-179251317-G-A NON_SYNONYMOUS_CODING 1 3289 0 1 3288 1.52E-4
5-179252184-A-G NON_SYNONYMOUS_CODING 32 3302 0 32 3270 0.0048
5-179260048-C-G NON_SYNONYMOUS_CODING 1 3317 0 1 3316 1.507E-4
5-179260099-G-C NON_SYNONYMOUS_CODING 161 3315 2 157 3156 0.0243
5-179260101-G-A NON_SYNONYMOUS_CODING 1 3316 0 1 3315 1.508E-4
5-179260111-AGAG-A CODON_DELETION 1 3316 0 1 3315 1.508E-4
5-179260164-C-T NON_SYNONYMOUS_CODING 1 3310 0 1 3309 1.511E-4
5-179260165-G-A SYNONYMOUS_CODING 4 3308 0 4 3304 6.046E-4
5-179260176-T-C NON_SYNONYMOUS_CODING 1 3303 0 1 3302 1.514E-4
5-179260183-C-T SYNONYMOUS_CODING 7 3284 0 7 3277 0.0011
5-179260201-G-A SYNONYMOUS_CODING 2 3221 0 2 3219 3.105E-4
5-179260232-G-A NON_SYNONYMOUS_CODING 7 2860 0 7 2853 0.0012
5-179260238-C-T NON_SYNONYMOUS_CODING 4 2771 0 4 2767 7.218E-4
5-179260239-G-A NON_SYNONYMOUS_CODING 1 2741 0 1 2740 1.824E-4
5-179260601-G-A SYNONYMOUS_CODING 41 3313 1 39 3273 0.0062
5-179260613-A-G SYNONYMOUS_CODING 1 3314 0 1 3313 1.509E-4
5-179260655-G-A SYNONYMOUS_CODING 2 3313 0 2 3311 3.018E-4
5-179260661-G-A SYNONYMOUS_CODING 9 3313 0 9 3304 0.0014
5-179260700-C-T SYNONYMOUS_CODING 1 3312 0 1 3311 1.51E-4
5-179260725-T-C NON_SYNONYMOUS_CODING 1 3309 0 1 3308 1.511E-4
5-179260739-C-T SYNONYMOUS_CODING 1 3310 0 1 3309 1.511E-4
5-179263445-C-T NON_SYNONYMOUS_CODING 10 3316 0 10 3306 0.0015
5-179263453-A-AT FRAME_SHIFT 1 3317 0 1 3316 1.507E-4
5-179263454-T-C NON_SYNONYMOUS_CODING 1 3317 0 1 3316 1.507E-4
5-179263471-A-C NON_SYNONYMOUS_CODING 1 3317 0 1 3316 1.507E-4
5-179263480-A-G NON_SYNONYMOUS_CODING 1 3317 0 1 3316 1.507E-4
5-179263487-T-C NON_SYNONYMOUS_CODING 1 3317 0 1 3316 1.507E-4
5-179263501-G-A NON_SYNONYMOUS_CODING 2 3316 0 2 3314 3.016E-4
5-179263510-A-C NON_SYNONYMOUS_CODING 1 3316 0 1 3315 1.508E-4
5-179263542-C-T NON_SYNONYMOUS_CODING 2 3317 0 2 3315 3.015E-4
5-179263547-C-T NON_SYNONYMOUS_CODING 1 3317 0 1 3316 1.507E-4
5-179263548-G-A NON_SYNONYMOUS_CODING 1 3317 0 1 3316 1.507E-4
5-179263586-C-T NON_SYNONYMOUS_CODING 1 3317 0 1 3316 1.507E-4
5-179264550-G-A UTR_3_PRIME 1 3305 0 1 3304 1.513E-4
5-179264584-G-T NON_SYNONYMOUS_CODING 1 3293 0 1 3292 1.518E-4
5-179264699-CAT-C FRAME_SHIFT 1 3304 0 1 3303 1.513E-4